Co-expression analysis

Gene ID	HVSMEl0012K16r2_at
Gene name
Homology with Arabidopsis	Similar to At5g47050: protein binding / zinc ion binding (HF=3e+0)
Module size	6 genes
NF	0.38
%ile	52.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.69	HVSMEl0012K16r2_at	HVSMEl0012K16r2	-	-	3e+0	At5g47050	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.73	HO06A21S_at	HO06A21S	-	-	1e-2	At2g44000	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.69	Contig3281_s_at	Contig3281	-	-	2e-45	At5g57655	xylose isomerase family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.69	Contig21540_at	Contig21540	-	-	7e-1	At4g11260	SGT1B	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.72	Contig22727_at	Contig22727	-	-	2e+0	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.70	EBro08_SQ010_P03_at	EBro08_SQ010_P03	-	-	5e-3	At1g23610	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.3	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.2	99.2	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.4	98.1	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.2	97.4	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.6	96.8	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.8	95.7	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.6	95.3	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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