Co-expression analysis

Gene ID	HVSMEl0009L02r2_at
Gene name
Homology with Arabidopsis	Similar to At5g55970: zinc finger (C3HC4-type RING finger) family protein (HF=8e-2)
Module size	9 genes
NF	0.42
%ile	58.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	80.9	0.84	HVSMEl0009L02r2_at	HVSMEl0009L02r2	-	-	8e-2	At5g55970	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.85	HT05O06u_x_at	HT05O06u	-	-	3e+0	At4g19470	disease resistance protein-related	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.83	HT07M09u_at	HT07M09u	-	-	2e-1	At2g24625	-	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.91	Contig11090_at	Contig11090	-	-	2e-6	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.84	Contig16053_at	Contig16053	-	-	6e+0	At4g32915	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.92	Contig8620_at	Contig8620	-	-	3e-1	At4g33565	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.91	Contig6226_at	Contig6226	-	-	3e-14	At3g20390	endoribonuclease L-PSP family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.84	Contig2464_at	Contig2464	vacuolar ATPase B subunit	-	2e-156	At1g20260	hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.89	Contig16710_at	Contig16710	-	-	2e+0	At4g21350	PUB8 (PLANT U-BOX 8)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.5	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.4	97.5	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.7	96.9	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.6	96.8	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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