Co-expression analysis

Gene ID HVSMEl0009B19r2_s_at
Gene name
Homology with ArabidopsisSimilar to At5g47220: ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) (HF=1e+0)
Module size 6 genes
NF 0.36
%ile 48.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.85HVSMEl0009B19r2_s_atHVSMEl0009B19r2--1e+0At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)O.I.H.G.S.X.
0.4458.90.97HY02C19u_atHY02C19u--5e+0At4g15610integral membrane family proteinO.I.H.G.S.X.
0.3647.10.95Contig12544_s_atContig12544--2e+1At5g03100F-box family proteinO.I.H.G.S.X.
0.3342.60.97V00087.1_atV00087.1--3e-1At5g43525-O.I.H.G.S.X.
0.2528.90.96AF474072_CDS-4_atAF474072_CDS-4--1e+0At5g05810ATL43O.I.H.G.S.X.
0.1716.90.96Contig10097_atContig10097--4e-1At3g16450jacalin lectin family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.299.4GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
8.298.7GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
6.798.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.298.0GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
5.297.4GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.297.4GSM282022Malting_day4_Merit_rep4GSE11200Expression data from malting barley seedsLink to GEO
4.997.1GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.496.6GSM282034Malting_steeped_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.11939.1.A1_at, orthologous to the query gene, HVSMEl0009B19r2_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.8Zm.11939.1.A1_atAt5g47220--7e-21At3g14350SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)O.I.H.G.S.X.
0.3131.6Zm.9219.1.A1_a_atAt5g47220hypothetical protein LOC100275751-3e-1At1g77340pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2521.3Zm.2190.1.A1_atAt5g47220hypothetical protein LOC100276270-6e+0At5g05930guanylyl cyclase-related (GC1)O.I.H.G.S.X.
0.2216.9Zm.18077.1.S1_atAt5g47220hypothetical protein LOC100193986-4e-8At1g08570ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)O.I.H.G.S.X.
0.158.6Zm.17794.1.S1_atAt5g47220hypothetical protein LOC100274149-6e-6At4g18230-O.I.H.G.S.X.
0.094.0Zm.3373.1.A1_atAt5g47220--1e+1At5g23740RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)O.I.H.G.S.X.
0.051.9Zm.19167.2.A1_x_atAt5g47220Hypothetical protein LOC100194096-9e+0At4g13160unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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