Co-expression analysis

Gene ID	HVSMEk0022L04r2_s_at
Gene name
Homology with Arabidopsis	Similar to At2g28800: ALB3 (ALBINO 3) (HF=9e-1)
Module size	16 genes
NF	0.17
%ile	20.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.8	0.91	HVSMEk0022L04r2_s_at	HVSMEk0022L04r2	-	-	9e-1	At2g28800	ALB3 (ALBINO 3)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig10881_at	Contig10881	-	-	4e+0	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	rbags5f04_s_at	rbags5f04	-	-	2e+0	At3g61678	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig11533_at	Contig11533	-	-	1e-1	At5g05070	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.93	Contig21378_at	Contig21378	-	-	1e-1	At3g24070	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig17753_at	Contig17753	-	-	8e-2	At3g09880	ATB' BETA	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig17419_at	Contig17419	-	-	2e-2	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig16379_s_at	Contig16379	-	-	3e-1	At2g44080	ARL (ARGOS-LIKE)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig16787_at	Contig16787	-	-	2e+0	At3g11320	organic anion transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig8078_at	Contig8078	-	-	7e-26	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig9141_at	Contig9141	-	-	8e-4	At5g08030	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.93	Contig13746_at	Contig13746	-	-	8e-10	At1g23540	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig13117_at	Contig13117	-	-	6e-1	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.92	Contig24535_at	Contig24535	-	-	2e-1	At3g51220	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.93	Contig10680_at	Contig10680	-	-	5e-1	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.93	Contig1503_s_at	Contig1503	-	-	2e-168	At5g62700	TUB3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	98.0	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0	96.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.2	94.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.0	93.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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