Co-expression analysis

Gene ID	HVSMEk0002N06r2_at
Gene name
Homology with Arabidopsis	Similar to At5g63280: zinc finger (C2H2 type) family protein (HF=2e+1)
Module size	6 genes
NF	0.12
%ile	15.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.91	HVSMEk0002N06r2_at	HVSMEk0002N06r2	-	-	2e+1	At5g63280	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig3914_s_at	Contig3914	-	-	5e-5	At2g47520	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.93	HVSMEk0002P01f_x_at	HVSMEk0002P01f	-	-	4e+0	At5g60960	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig4516_at	Contig4516	-	-	5e-11	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.92	Contig4515_at	Contig4515	-	-	4e-3	At1g53210	sodium/calcium exchanger family protein / calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.92	Contig131_at	Contig131	-	-	1e-21	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	95.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.8	93.1	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
2.7	92.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.7	92.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.5	91.9	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.5	91.9	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
2.4	91.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.3	90.9	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.3	90.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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