Co-expression analysis

Gene ID	HVSMEi0017H19r2_s_at
Gene name
Homology with Arabidopsis	Similar to At3g07890: RabGAP/TBC domain-containing protein (HF=2e+0)
Module size	6 genes
NF	0.12
%ile	14.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.91	HVSMEi0017H19r2_s_at	HVSMEi0017H19r2	-	-	2e+0	At3g07890	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.91	HVSMEg0010K10r2_at	HVSMEg0010K10r2	-	-	9e-1	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	ChlorContig6_at	ChlorContig6	-	-	3e+0	At1g05990	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.91	EBro08_SQ012_N02_at	EBro08_SQ012_N02	-	-	2e-1	At5g35610	paired amphipathic helix repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.93	HVSMEb0001J09r2_x_at	HVSMEb0001J09r2	-	-	7e+0	At5g45710	RHA1 (ROOT HANDEDNESS 1)	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.91	HV_CEa0002J17f2_x_at	HV_CEa0002J17f2	-	-	3e+0	At5g43480	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.9	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.7	98.3	GSM372942	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.9	97.9	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.3	97.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.5	96.7	GSM372979	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.5	95.1	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.4	94.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.1	94.1	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage