Co-expression analysis

Gene ID HVSMEi0012H03r2_at
Gene name
Homology with ArabidopsisSimilar to At1g06640: 2-oxoglutarate-dependent dioxygenase, putative (HF=2e-1)
Module size 6 genes
NF 0.01
%ile 0.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.68HVSMEi0012H03r2_atHVSMEi0012H03r2--2e-1At1g066402-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.086.50.86Contig24039_atContig24039--1e+0At3g60600VAP (VESICLE ASSOCIATED PROTEIN)O.I.H.G.S.X.
0.043.40.87HVSMEg0010K10r2_atHVSMEg0010K10r2--9e-1At5g52200unknown proteinO.I.H.G.S.X.
0.032.60.86ChlorContig6_atChlorContig6--3e+0At1g05990calcium-binding protein, putativeO.I.H.G.S.X.
-0.20.88Contig16016_atContig16016--2e+0At1g59710-O.I.H.G.S.X.
-0.20.85HVSMEn0001D07r2_atHVSMEn0001D07r2--6e-1At2g25260unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5066.90.88HVSMEg0011P04r2_atHVSMEg0011P04r2--4e+0At5g19210DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.4458.90.78HVSMEn0023G06r2_atHVSMEn0023G06r2--6e-2At5g21940unknown proteinO.I.H.G.S.X.
0.4458.90.86HC109H12_T3_atHC109H12_T3--1e+0At5g40570surfeit locus protein 2 family protein / SURF2 family proteinO.I.H.G.S.X.
0.3647.10.92HVSMEi0017H19r2_s_atHVSMEi0017H19r2--2e+0At3g07890RabGAP/TBC domain-containing proteinO.I.H.G.S.X.
0.3342.60.81AF474373_CDS-2_atAF474373_CDS-2--3e-1At1g52905unknown proteinO.I.H.G.S.X.
0.3342.60.87Contig26466_atContig26466--3e+0At3g42960ATA1 (ARABIDOPSIS TAPETUM 1)O.I.H.G.S.X.
0.3138.60.85Contig2258_atContig2258--1e-1At1g11850unknown proteinO.I.H.G.S.X.
0.3138.60.85EBro02_SQ008_B24_atEBro02_SQ008_B24--1e+1At3g11050ATFER2 (ferritin 2)O.I.H.G.S.X.
0.2935.50.81HVSMEg0013I19r2_s_atHVSMEg0013I19r2--2e-1At3g06330zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2935.50.87HVSMEc0005H22f_x_atHVSMEc0005H22f--8e+0At5g40700unknown proteinO.I.H.G.S.X.
0.2732.10.82HVSMEk0020L22r2_x_atHVSMEk0020L22r2--4e+1Atcg00430-O.I.H.G.S.X.
0.2732.10.84HVSMEf0016E23r2_s_atHVSMEf0016E23r2--9e-1At2g30130ASL5O.I.H.G.S.X.
0.2732.10.89HVSMEl0005O09r2_atHVSMEl0005O09r2--3e+0At4g32020unknown proteinO.I.H.G.S.X.
0.2528.90.83HT09D11u_atHT09D11u--2e+0At2g33855unknown proteinO.I.H.G.S.X.
0.2528.90.86Contig2109_s_atContig2109--4e-1At5g59890ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)O.I.H.G.S.X.
0.2528.90.88HS06P03u_x_atHS06P03u--2e+0At2g36130peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.799.6GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
15.499.6GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
8.998.9GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.798.9GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
7.298.5GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.197.3GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.596.7GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.096.0GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.895.7GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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