Co-expression analysis

Gene ID	HVSMEi0012H03r2_at
Gene name
Homology with Arabidopsis	Similar to At1g06640: 2-oxoglutarate-dependent dioxygenase, putative (HF=2e-1)
Module size	6 genes
NF	0.01
%ile	0.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.68	HVSMEi0012H03r2_at	HVSMEi0012H03r2	-	-	2e-1	At1g06640	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.86	Contig24039_at	Contig24039	-	-	1e+0	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.87	HVSMEg0010K10r2_at	HVSMEg0010K10r2	-	-	9e-1	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.86	ChlorContig6_at	ChlorContig6	-	-	3e+0	At1g05990	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
-	0.2	0.88	Contig16016_at	Contig16016	-	-	2e+0	At1g59710	-	O.I.	H.G.	S.X.	Please select
-	0.2	0.85	HVSMEn0001D07r2_at	HVSMEn0001D07r2	-	-	6e-1	At2g25260	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.7	99.6	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
15.4	99.6	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.9	98.9	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.2	98.5	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.1	97.3	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.5	96.7	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0	96.0	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.8	95.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.200385.1.S1_at, orthologous to the query gene, HVSMEi0012H03r2_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	PtpAffx.200385.1.S1_at	At1g06640	AP2/ERF domain-containing transcription factor	-	9e-13	At4g11140	CRF1 (CYTOKININ RESPONSE FACTOR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	Ptp.2062.1.A1_at	At1g06640	hypothetical protein	-	3e-33	At1g48430	dihydroxyacetone kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.11164.1.A1_a_at	At1g06640	hypothetical protein	-	8e-11	At3g01130	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.101592.1.S1_at	At1g06640	hypothetical protein	-	4e-20	At5g51840	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.213869.1.S1_at	At1g06640	hypothetical protein	-	4e-89	At3g01540	DRH1 (DEAD BOX RNA HELICASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.82869.1.A1_at	At1g06640	-	-	4e+0	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.217588.1.S1_at	At1g06640	hypothetical protein	-	9e-37	At5g57590	BIO1 (biotin auxotroph 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.99503.1.S1_s_at	At1g06640	hypothetical protein	-	1e+0	At3g29370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.48775.2.S1_at	At1g06640	hypothetical protein	-	1e-12	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.63320.1.A1_at	At1g06640	-	-	1e-1	At5g64420	DNA polymerase V family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.220978.1.S1_s_at	At1g06640	hypothetical protein	-	8e-33	At3g17770	dihydroxyacetone kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.213100.1.S1_at	At1g06640	hypothetical protein	-	1e-46	At2g45950	ASK20 (ARABIDOPSIS SKP1-LIKE 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.2515.1.A1_a_at	At1g06640	-	-	6e+0	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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