Co-expression analysis

Gene ID HVSMEi0012H03r2_at
Gene name
Homology with ArabidopsisSimilar to At1g06640: 2-oxoglutarate-dependent dioxygenase, putative (HF=2e-1)
Module size 6 genes
NF 0.01
%ile 0.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.68HVSMEi0012H03r2_atHVSMEi0012H03r2--2e-1At1g066402-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.086.50.86Contig24039_atContig24039--1e+0At3g60600VAP (VESICLE ASSOCIATED PROTEIN)O.I.H.G.S.X.
0.043.40.87HVSMEg0010K10r2_atHVSMEg0010K10r2--9e-1At5g52200unknown proteinO.I.H.G.S.X.
0.032.60.86ChlorContig6_atChlorContig6--3e+0At1g05990calcium-binding protein, putativeO.I.H.G.S.X.
-0.20.88Contig16016_atContig16016--2e+0At1g59710-O.I.H.G.S.X.
-0.20.85HVSMEn0001D07r2_atHVSMEn0001D07r2--6e-1At2g25260unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.799.6GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
15.499.6GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
8.998.9GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.798.9GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
7.298.5GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.197.3GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.596.7GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.096.0GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.895.7GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0263100, orthologous to the query gene, HVSMEi0012H03r2_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6583.8Os03g0263100At1g06640--1e+1At5g26790unknown proteinO.I.H.G.S.X.
0.8395.8Os04g0368900At1g06640--1e-2At2g28510Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.8295.0Os04g0291600At1g06640--3e+0At3g44950glycine-rich proteinO.I.H.G.S.X.
0.7793.1Os08g0437300At1g06640-Conserved hypothetical protein5e-7At4g38620MYB4O.I.H.G.S.X.
0.7491.4Os07g0664400At1g06640-Alcohol dehydrogenase-like protein7e+0At2g25697unknown proteinO.I.H.G.S.X.
0.7391.1Os10g0470400At1g06640--6e+0At5g36280-O.I.H.G.S.X.
0.6987.9Os11g0185600At1g06640--7e+0At5g10130pollen Ole e 1 allergen and extensin family proteinO.I.H.G.S.X.
0.6787.2Os09g0556100At1g06640--1e+1At5g55570unknown proteinO.I.H.G.S.X.
0.6787.2Os02g0501150At1g06640--6e-2At5g55750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.6483.4Os04g0374000At1g06640-NBS-LRR protein (Fragment)2e+0At1g79810TED3 (REVERSAL OF THE DET PHENOTYPE 3)O.I.H.G.S.X.
0.6181.2Os11g0254000At1g06640--4e-1At1g61920unknown proteinO.I.H.G.S.X.
0.6181.2Os05g0461200At1g06640--1e-1At5g35620LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)O.I.H.G.S.X.
0.5777.0Os06g0349300At1g06640--5e+0At2g21170TIM (TRIOSEPHOSPHATE ISOMERASE)O.I.H.G.S.X.
0.5371.3Os10g0579000At1g06640--4e+0At5g6751060S ribosomal protein L26 (RPL26B)O.I.H.G.S.X.
0.4863.7Os07g0286200At1g06640--8e-1At3g63095-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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