Co-expression analysis

Gene ID HVSMEi0012H03r2_at
Gene name
Homology with ArabidopsisSimilar to At1g06640: 2-oxoglutarate-dependent dioxygenase, putative (HF=2e-1)
Module size 6 genes
NF 0.01
%ile 0.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.68HVSMEi0012H03r2_atHVSMEi0012H03r2--2e-1At1g066402-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.086.50.86Contig24039_atContig24039--1e+0At3g60600VAP (VESICLE ASSOCIATED PROTEIN)O.I.H.G.S.X.
0.043.40.87HVSMEg0010K10r2_atHVSMEg0010K10r2--9e-1At5g52200unknown proteinO.I.H.G.S.X.
0.032.60.86ChlorContig6_atChlorContig6--3e+0At1g05990calcium-binding protein, putativeO.I.H.G.S.X.
-0.20.88Contig16016_atContig16016--2e+0At1g59710-O.I.H.G.S.X.
-0.20.85HVSMEn0001D07r2_atHVSMEn0001D07r2--6e-1At2g25260unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.799.6GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
15.499.6GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
8.998.9GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.798.9GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
7.298.5GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.197.3GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.596.7GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.096.0GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.895.7GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.4456.1.S1_at, orthologous to the query gene, HVSMEi0012H03r2_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8993.5Gma.4456.1.S1_atAt1g06640--4e+0At5g48640cyclin family proteinO.I.H.G.S.X.
0.3346.1GmaAffx.15743.1.S1_atAt1g06640--8e-27At2g47250RNA helicase, putativeO.I.H.G.S.X.
0.2839.0Gma.6450.1.S1_atAt1g06640--6e-22At1g18070EF-1-alpha-related GTP-binding protein, putativeO.I.H.G.S.X.
0.2532.6Gma.12242.1.A1_s_atAt1g06640--4e+0At5g41908unknown proteinO.I.H.G.S.X.
0.2329.9GmaAffx.75093.1.A1_s_atAt1g06640--1e+1At5g65640bHLH093 (beta HLH protein 93)O.I.H.G.S.X.
0.2025.1Gma.2609.1.S1_s_atAt1g06640--4e-73At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.2025.1GmaAffx.1301.61.A1_atAt1g06640--7e+0At3g26740CCL (CCR-LIKE)O.I.H.G.S.X.
0.2025.1Gma.3090.1.S1_atAt1g06640--3e-8At5g17900-O.I.H.G.S.X.
0.1923.7Gma.5381.1.S1_atAt1g06640--1e-125At5g50320ELO3 (ELONGATA 3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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