Co-expression analysis

Gene ID HVSMEh0080L10r2_x_at
Gene name
Homology with ArabidopsisSimilar to At3g54890: LHCA1 (HF=6e-11)
Module size 7 genes
NF 0.46
%ile 63.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.94HVSMEh0080L10r2_x_atHVSMEh0080L10r2--6e-11At3g54890LHCA1O.I.H.G.S.X.
0.6178.70.95Contig7336_s_atContig7336--5e+0At3g26520TIP2 (TONOPLAST INTRINSIC PROTEIN 2)O.I.H.G.S.X.
0.5674.30.95HW04B18u_s_atHW04B18u--8e+0At5g09560KH domain-containing proteinO.I.H.G.S.X.
0.4661.00.95Contig5326_atContig5326--2e-11At4g38600KAK (KAKTUS)O.I.H.G.S.X.
0.4053.10.95Contig19984_atContig19984--2e+0At1g75800pathogenesis-related thaumatin family proteinO.I.H.G.S.X.
0.3240.30.95Contig7047_atContig7047--7e-2At5g03660unknown proteinO.I.H.G.S.X.
0.3037.00.95rbaak32b03_s_atrbaak32b03--4e-13At3g63520CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.8GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.598.6GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.398.5GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.097.9GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.797.7GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.196.2GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.196.2GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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