Co-expression analysis

Gene ID	HVSMEg0016P19f_x_at
Gene name
Homology with Arabidopsis	Similar to At2g36261: unknown protein (HF=2e-2)
Module size	38 genes
NF	0.22
%ile	27.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.92	HVSMEg0016P19f_x_at	HVSMEg0016P19f	-	-	2e-2	At2g36261	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.94	HVSMEm0004D09r2_at	HVSMEm0004D09r2	-	-	3e-1	At2g20500	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig10018_at	Contig10018	-	-	3e-2	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	Contig11034_at	Contig11034	-	-	9e-12	At3g53180	catalytic/ glutamate-ammonia ligase	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	EBro02_SQ006_H18_s_at	EBro02_SQ006_H18	-	-	2e+0	At1g36510	-	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig8816_at	Contig8816	-	-	4e+0	At5g14670	ATARFA1B (ADP-ribosylation factor A1B)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	HD08D07r_s_at	HD08D07r	-	-	9e+0	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig12452_at	Contig12452	-	-	1e-1	At3g28956	catalytic/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	HD05C22r_at	HD05C22r	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig14066_at	Contig14066	-	-	1e-1	At5g19151	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	Contig7648_at	Contig7648	-	-	6e-1	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	Contig7046_at	Contig7046	-	-	2e+0	At2g21600	ATRER1B	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	Contig19622_at	Contig19622	-	-	1e+0	At3g60966	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.93	Contig15111_at	Contig15111	-	-	2e-2	At1g14150	oxygen evolving enhancer 3 (PsbQ) family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig12203_at	Contig12203	-	-	2e+0	At5g09530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig2937_s_at	Contig2937	-	-	9e-27	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	HVSMEg0018F23r2_at	HVSMEg0018F23r2	-	-	1e+0	At5g15480	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig3707_at	Contig3707	-	-	1e-23	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig1549_s_at	Contig1549	-	-	2e-29	At3g10950	60S ribosomal protein L37a (RPL37aB)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig119_at	Contig119	-	-	1e-6	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig9154_at	Contig9154	-	-	7e-1	At4g39340	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	rbah36k01_s_at	rbah36k01	-	-	1e+0	At3g04430	anac049 (Arabidopsis NAC domain containing protein 49)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig10745_at	Contig10745	-	-	5e-1	At5g43380	TOPP6	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig12495_at	Contig12495	-	-	4e-11	At4g31790	diphthine synthase, putative (DPH5)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig6926_at	Contig6926	-	-	2e-1	At5g15520	40S ribosomal protein S19 (RPS19B)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig10962_at	Contig10962	-	-	1e+0	At4g27657	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig8059_at	Contig8059	-	-	8e-18	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig15062_at	Contig15062	-	-	1e-1	At4g25440	ZFWD1 (zinc finger WD40 repeat protein 1)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig10064_at	Contig10064	-	-	2e+0	At2g12465	LCR50 (Low-molecular-weight cysteine-rich 50)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	HVSMEa0009I06r2_at	HVSMEa0009I06r2	-	-	9e+0	At5g59060	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig3268_at	Contig3268	-	-	3e-30	At3g26340	20S proteasome beta subunit E, putative	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig7320_at	Contig7320	-	-	2e-1	At1g26690	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig9524_at	Contig9524	-	-	2e+0	At1g31400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.96	Contig9554_s_at	Contig9554	-	-	8e-8	At4g01560	MEE49 (maternal effect embryo arrest 49)	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig10848_at	Contig10848	-	-	9e-9	At3g43700	ATBPM6 (BTB-POZ and MATH domain 6)	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig13002_at	Contig13002	-	-	2e-10	At1g45150	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig10614_at	Contig10614	-	-	2e-13	At5g13520	peptidase M1 family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.96	Contig26395_at	Contig26395	-	-	5e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5	96.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
2.4	91.4	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.2	90.3	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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