Co-expression analysis

Gene ID	HVSMEg0015I15r2_at
Gene name
Homology with Arabidopsis	Similar to At3g48890: ATMP2 (HF=1e-6)
Module size	6 genes
NF	0.57
%ile	79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	HVSMEg0015I15r2_at	HVSMEg0015I15r2	-	-	1e-6	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig12065_at	Contig12065	-	-	1e+0	At5g61670	-	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig6946_at	Contig6946	-	-	1e-5	At5g01200	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig4476_at	Contig4476	-	-	7e-26	At5g63620	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig6329_at	Contig6329	-	-	3e-31	At2g40490	HEME2	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig7725_at	Contig7725	-	-	8e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	99.0	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
7.4	98.5	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
5.3	97.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.8	93.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
2.7	92.7	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
2.6	92.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.2453.1.S1_at, orthologous to the query gene, HVSMEg0015I15r2_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	Ptp.2453.1.S1_at	At3g48890	hypothetical protein	-	2e-28	At5g52240	MSBP1 (membrane steroid binding protein 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.4784.1.A1_s_at	At3g48890	hypothetical protein	-	8e+0	At5g27290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	Ptp.7476.1.A1_s_at	At3g48890	hypothetical protein	-	4e-42	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.4943.1.S1_at	At3g48890	hypothetical protein	-	2e-99	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.6505.1.A1_s_at	At3g48890	hypothetical protein	-	2e-36	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	Ptp.5592.1.S1_at	At3g48890	hypothetical protein	-	5e-82	At5g38480	GRF3 (GENERAL REGULATORY FACTOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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