CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HVSMEg0015I15r2_at

Gene name
Homology with Arabidopsis Similar to At3g48890: ATMP2 (HF=1e-6)

Module size 6 genes

NF 0.57

%ile 79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.96 HVSMEg0015I15r2_at HVSMEg0015I15r2 - - 1e-6 At3g48890 ATMP2 O.I. H.G. S.X.
0.80 92.5 0.96 Contig12065_at Contig12065 - - 1e+0 At5g61670 - O.I. H.G. S.X.
0.61 78.7 0.96 Contig6946_at Contig6946 - - 1e-5 At5g01200 myb family transcription factor O.I. H.G. S.X.
0.61 78.7 0.96 Contig4476_at Contig4476 - - 7e-26 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.
0.55 72.0 0.96 Contig6329_at Contig6329 - - 3e-31 At2g40490 HEME2 O.I. H.G. S.X.
0.20 21.1 0.96 Contig7725_at Contig7725 - - 8e-1 At1g22180 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.4 99.0 GSM363465 5 mM B(OH)3 treatment (5B) - rep3 GSE14521 Late response to boron toxicity in barley leaves
7.4 98.5 GSM363461 Control (C) - rep2 GSE14521 Late response to boron toxicity in barley leaves
5.3 97.4 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.7 95.5 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
2.8 93.1 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7 92.7 GSM363467 10 mM B(OH)3 treatment (10B) - rep2 GSE14521 Late response to boron toxicity in barley leaves
2.7 92.7 GSM160823 19% SWC rep1 GSE6990 Barley drought stress
2.6 92.3 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g48890, orthologous to the query gene, HVSMEg0015I15r2_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.12 4.9 At3g48890 824050 ATMP2 putative progesterone-binding protein homolog (Atmp2) mRNA, O.I. H.G. S.X.
0.50 65.3 At3g54640 824629 TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN) Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2). O.I. H.G. S.X.
0.44 57.2 At1g10700 837613 ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3) F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:chloroplast;BOMFAPV O.I. H.G. S.X.
0.43 55.3 At2g04400 814980 indole-3-glycerol phosphate synthase (IGPS) F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFP O.I. H.G. S.X.
0.40 50.8 At2g24180 816952 CYP71B6 (CYTOCHROME P450 71B6) cytochrome P450 monooxygenase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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