Co-expression analysis

Gene ID HVSMEg0010K10r2_at
Gene name
Homology with ArabidopsisSimilar to At5g52200: unknown protein (HF=9e-1)
Module size 6 genes
NF 0.06
%ile 7.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.91HVSMEg0010K10r2_atHVSMEg0010K10r2--9e-1At5g52200unknown proteinO.I.H.G.S.X.
0.6784.70.92ChlorContig6_atChlorContig6--3e+0At1g05990calcium-binding protein, putativeO.I.H.G.S.X.
0.5572.00.92HVSMEi0017H19r2_s_atHVSMEi0017H19r2--2e+0At3g07890RabGAP/TBC domain-containing proteinO.I.H.G.S.X.
0.108.40.92HVSMEb0001J09r2_x_atHVSMEb0001J09r2--7e+0At5g45710RHA1 (ROOT HANDEDNESS 1)O.I.H.G.S.X.
0.043.40.91HV_CEa0002J17f2_x_atHV_CEa0002J17f2--3e+0At5g43480unknown proteinO.I.H.G.S.X.
0.021.80.90HS06P18u_atHS06P18u--5e-1At3g22630PBD1 (20S PROTEASOME BETA SUBUNIT D1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.9GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
6.498.1GSM372942genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
5.897.8GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.397.4GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.596.7GSM372979genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.895.7GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
3.394.6GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.394.6GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.194.1GSM372973genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.993.4GSM146376Maythorpe shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.929.1.S1_at, orthologous to the query gene, HVSMEg0010K10r2_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6179.5ZmAffx.929.1.S1_atAt5g52200--5e-2At5g17900-O.I.H.G.S.X.
0.3844.2Zm.18245.1.S1_atAt5g52200--2e+0At5g18130unknown proteinO.I.H.G.S.X.
0.3538.9ZmAffx.954.1.S1_atAt5g52200--3e+0At1g26480GRF12 (GENERAL REGULATORY FACTOR 12)O.I.H.G.S.X.
0.3538.9Zm.4716.1.A1_atAt5g52200hypothetical protein LOC100193057-1e-1At4g37750ANT (AINTEGUMENTA)O.I.H.G.S.X.
0.3437.2ZmAffx.1283.1.S1_atAt5g52200--9e-1At1g32470glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.3233.4Zm.9948.1.A1_atAt5g522003-N-debenzoyl-2-deoxytaxol N-benzoyltransferase-2e+0At1g54575unknown proteinO.I.H.G.S.X.
0.2928.1Zm.12454.1.A1_atAt5g52200hypothetical protein LOC100273736-6e-3At1g10640polygalacturonaseO.I.H.G.S.X.
0.2318.6Zm.7791.1.A1_atAt5g52200hypothetical protein LOC100191966-3e-8At4g15960catalytic/ epoxide hydrolaseO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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