Co-expression analysis

Gene ID	HVSMEg0010K10r2_at
Gene name
Homology with Arabidopsis	Similar to At5g52200: unknown protein (HF=9e-1)
Module size	6 genes
NF	0.06
%ile	7.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.91	HVSMEg0010K10r2_at	HVSMEg0010K10r2	-	-	9e-1	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	ChlorContig6_at	ChlorContig6	-	-	3e+0	At1g05990	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.92	HVSMEi0017H19r2_s_at	HVSMEi0017H19r2	-	-	2e+0	At3g07890	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.92	HVSMEb0001J09r2_x_at	HVSMEb0001J09r2	-	-	7e+0	At5g45710	RHA1 (ROOT HANDEDNESS 1)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.91	HV_CEa0002J17f2_x_at	HV_CEa0002J17f2	-	-	3e+0	At5g43480	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.90	HS06P18u_at	HS06P18u	-	-	5e-1	At3g22630	PBD1 (20S PROTEASOME BETA SUBUNIT D1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.9	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.4	98.1	GSM372942	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.8	97.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.3	97.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.5	96.7	GSM372979	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.3	94.6	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.3	94.6	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.1	94.1	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9	93.4	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.222279.1.S1_x_at, orthologous to the query gene, HVSMEg0010K10r2_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	96.3	PtpAffx.222279.1.S1_x_at	At5g52200	hypothetical protein	-	1e-28	Atcg00040	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.147335.1.A1_at	At5g52200	hypothetical protein	-	2e-12	At1g62390	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.147311.1.A1_at	At5g52200	hypothetical protein /// glutamate-gated kainate-type ion channel receptor subunit GluR5	-	2e-12	At2g17265	HSK (HOMOSERINE KINASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.5867.1.S1_at	At5g52200	-	-	1e-42	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.6435.1.S1_at	At5g52200	hypothetical protein	-	5e-26	At5g26880	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.114620.1.A1_at	At5g52200	-	-	9e+0	Atcg01080	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.213727.1.S1_at	At5g52200	hypothetical protein	-	8e-1	At2g22320	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.215363.1.S1_at	At5g52200	hypothetical protein	-	3e+0	At5g52340	ATEXO70A2 (exocyst subunit EXO70 family protein A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.15017.2.A1_a_at	At5g52200	hypothetical protein	-	3e-14	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.1692.1.A1_s_at	At5g52200	hypothetical protein	-	1e-5	At5g26880	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.211252.1.S1_at	At5g52200	hypothetical protein	-	2e-10	At3g56330	N2,N2-dimethylguanosine tRNA methyltransferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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