Co-expression analysis

Gene ID	HVSMEf0017C20f2_s_at
Gene name
Homology with Arabidopsis	Similar to At3g55240: - (HF=3e+0)
Module size	6 genes
NF	0.10
%ile	12.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.29	35.5	0.67	HVSMEf0017C20f2_s_at	HVSMEf0017C20f2	-	-	3e+0	At3g55240	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.72	Contig6408_at	Contig6408	-	-	6e-1	At1g21900	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.74	HD13A06r_at	HD13A06r	-	-	4e+0	At3g43430	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.72	Contig15762_at	Contig15762	-	-	8e-3	At2g30920	ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.63	Contig8705_at	Contig8705	-	-	1e-58	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.64	Contig16673_at	Contig16673	-	-	2e-1	At5g41680	protein kinase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.7	99.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
8.5	98.8	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.7	98.6	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.4	98.1	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.8	97.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
5.5	97.6	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.5	97.6	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.9	97.1	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.9	97.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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