Co-expression analysis

Gene ID	HVSMEf0008B14r2_s_at
Gene name
Homology with Arabidopsis	Similar to At1g28335: LCR31 (Low-molecular-weight cysteine-rich 31) (HF=2e-1)
Module size	9 genes
NF	0.29
%ile	37.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.91	HVSMEf0008B14r2_s_at	HVSMEf0008B14r2	-	-	2e-1	At1g28335	LCR31 (Low-molecular-weight cysteine-rich 31)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig9037_at	Contig9037	-	-	1e-1	At3g42310	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig16601_at	Contig16601	-	-	3e+0	At2g40070	-	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig3899_at	Contig3899	-	-	6e-10	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig145_x_at	Contig145	-	-	4e-10	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.92	baak34e14_at	baak34e14	-	-	3e+0	At2g32340	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig13294_at	Contig13294	-	-	6e+0	At5g28463	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig11136_at	Contig11136	-	-	4e-2	At3g60910	catalytic/ methyltransferase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.7	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM372974	genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM372997	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM372992	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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