CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HVSMEf0007L15f_s_at

Gene name
Homology with Arabidopsis Similar to At1g32600: F-box family protein-related (HF=4e+0)

Module size 17 genes

NF 0.13

%ile 16.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 88.7 0.89 HVSMEf0007L15f_s_at HVSMEf0007L15f - - 4e+0 At1g32600 F-box family protein-related O.I. H.G. S.X.
0.30 37.0 0.91 HD08L01r_x_at HD08L01r - - 3e+0 At5g20165 unknown protein O.I. H.G. S.X.
0.27 32.1 0.92 HV_CEa0009K11r2_at HV_CEa0009K11r2 - - 3e+0 At4g23010 UDP-galactose transporter-related O.I. H.G. S.X.
0.23 26.1 0.93 HW01F21u_at HW01F21u - - 6e+0 At1g07901 unknown protein O.I. H.G. S.X.
0.19 19.6 0.92 HB19A22r_x_at HB19A22r - - 6e-1 At1g69620 RPL34 (RIBOSOMAL PROTEIN L34) O.I. H.G. S.X.
0.18 18.2 0.92 HVSMEc0011F12r2_at HVSMEc0011F12r2 - - 5e+0 At4g19925 disease resistance protein (TIR class), putative O.I. H.G. S.X.
0.18 18.2 0.94 rbaal28o12_x_at rbaal28o12 - - 1e+0 At2g13570 NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7) O.I. H.G. S.X.
0.18 18.2 0.94 HY10O14u_x_at HY10O14u - - 6e-2 At2g47270 transcription factor/ transcription regulator O.I. H.G. S.X.
0.16 15.3 0.93 HV12N12u_at HV12N12u - - 7e-2 At5g41200 AGL75 (AGAMOUS-LIKE 75) O.I. H.G. S.X.
0.14 12.9 0.92 HVSMEl0006A12r2_at HVSMEl0006A12r2 - - 2e+0 At5g57450 XRCC3 O.I. H.G. S.X.
0.13 11.6 0.93 HA10K08u_at HA10K08u - - 4e+0 At1g15830 unknown protein O.I. H.G. S.X.
0.11 9.4 0.94 EBro01_SQ003_J07_at EBro01_SQ003_J07 - - 3e+0 At1g66475 unknown protein O.I. H.G. S.X.
0.09 7.4 0.92 Contig14244_at Contig14244 - - 2e+0 At1g73640 AtRABA6a (Arabidopsis Rab GTPase homolog A6a) O.I. H.G. S.X.
0.08 6.5 0.93 rbaal31p03_s_at rbaal31p03 - - 2e-22 At2g47170 ARF1A1C O.I. H.G. S.X.
0.08 6.5 0.94 Contig17513_at Contig17513 - - 4e-4 At5g06600 UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) O.I. H.G. S.X.
0.06 4.8 0.94 HA10K08u_x_at HA10K08u - - 4e+0 At1g15830 unknown protein O.I. H.G. S.X.
0.05 4.1 0.93 Contig10700_at Contig10700 - - 2e+0 At4g15990 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.1 99.5 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
12.4 99.4 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.5 98.2 GSM398263 HS41-1_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.7 96.9 GSM398261 HS41-1_0d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.4 94.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
3.3 94.6 GSM261029 ABA-Late-rep3 GSE10328 ABA experiment
3.1 94.1 GSM372990 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0 93.8 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
2.3 90.9 GSM372954 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.3 90.9 GSM372987 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage