Co-expression analysis

Gene ID	HVSMEf0005F10r2_at
Gene name
Homology with Arabidopsis	Similar to Atcg01310: - (HF=1e+1)
Module size	8 genes
NF	0.59
%ile	81.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.96	HVSMEf0005F10r2_at	HVSMEf0005F10r2	-	-	1e+1	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.97	Contig6082_at	Contig6082	-	-	2e+0	At3g52760	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig12375_at	Contig12375	-	-	1e-4	At3g28940	avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.97	Contig21045_at	Contig21045	-	-	4e+0	At5g51130	methyltransferase	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	Contig3024_at	Contig3024	-	-	3e+0	At3g13310	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig8695_at	Contig8695	-	-	3e+0	At3g28140	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig9509_at	Contig9509	-	-	7e-1	At3g23980	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig10037_at	Contig10037	-	-	9e-1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.3	99.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.8	95.7	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.4	94.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.3	94.6	GSM71155	Morex stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.2	94.3	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.1	94.1	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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