Co-expression analysis

Gene ID HVSMEf0003F23r2_at
Gene name
Homology with ArabidopsisSimilar to At5g09570: - (HF=9e-1)
Module size 6 genes
NF 0.49
%ile 68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.87HVSMEf0003F23r2_atHVSMEf0003F23r2--9e-1At5g09570-O.I.H.G.S.X.
0.5066.90.84Contig4931_atContig4931--1e-22At1g75850VPS35B (VPS35 HOMOLOG B)O.I.H.G.S.X.
0.4458.90.88Contig9481_atContig9481--2e+0At5g60830AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)O.I.H.G.S.X.
0.4053.10.88Contig6238_s_atContig6238--1e-7At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)O.I.H.G.S.X.
0.3342.60.87Contig6233_s_atContig6233--3e-8At5g08790ATAF2O.I.H.G.S.X.
0.2935.50.87Contig12297_atContig12297--1e+0At3g13190myosin heavy chain-relatedO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7388.70.84HY07D14u_s_atHY07D14u--3e+0At5g20230ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)O.I.H.G.S.X.
0.5066.90.78Contig3390_atContig3390--5e-9At1g27680APL2 (ADPGLC-PPASE LARGE SUBUNIT)O.I.H.G.S.X.
0.5066.90.81Contig12697_atContig12697--3e-9At1g52920GPCR (G PROTEIN COUPLED RECEPTOR)O.I.H.G.S.X.
0.5066.90.94Contig6235_s_atContig6235--1e+0At3g27850RPL12-C (ribosomal protein l12-c)O.I.H.G.S.X.
0.4661.00.83Contig12695_atContig12695--2e-3At2g43560immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.4458.90.83rbah58n17_s_atrbah58n17--1e+0At1g77855unknown proteinO.I.H.G.S.X.
0.4053.10.79Contig19812_atContig19812--9e-1At3g55530SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1)O.I.H.G.S.X.
0.4053.10.79Contig19916_atContig19916--8e-18At5g04920vacuolar protein sorting 36 family protein / VPS36 family proteinO.I.H.G.S.X.
0.3849.50.71Contig4754_atContig4754--2e-17At2g19790clathrin adaptor complex small chain family proteinO.I.H.G.S.X.
0.3849.50.71rbags11h24_atrbags11h24--3e+0At4g33985unknown proteinO.I.H.G.S.X.
0.3849.50.72HVSMEl0002G04r2_atHVSMEl0002G04r2--8e+0Atmg01220-O.I.H.G.S.X.
0.3647.10.74Contig9098_atContig9098--2e-8At4g02350exocyst complex subunit Sec15-like family proteinO.I.H.G.S.X.
0.3647.10.88Contig15767_atContig15767--1e-1At1g21520unknown proteinO.I.H.G.S.X.
0.3342.60.75Contig338_s_atContig338--2e-39At1g09200histone H3O.I.H.G.S.X.
0.3342.60.80HI04F14u_atHI04F14u--4e+0At5g16486-O.I.H.G.S.X.
0.3342.60.83Contig26206_atContig26206--7e-2At4g21620glycine-rich proteinO.I.H.G.S.X.
0.3240.30.70Contig4635_atContig4635--7e-23At1g01090PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)O.I.H.G.S.X.
0.3037.00.76Contig16568_s_atContig16568--1e+0At1g49110unknown proteinO.I.H.G.S.X.
0.3037.00.79HM05N21r_atHM05N21r--1e+0At2g17120LYM2 (LYSM DOMAIN GPI-ANCHORED PROTEIN 2 PRECURSOR)O.I.H.G.S.X.
0.2935.50.68Contig4636_atContig4636--4e+0At4g0081060S acidic ribosomal protein P1 (RPP1B)O.I.H.G.S.X.
0.2935.50.77Contig23830_atContig23830--2e-2At2g22630AGL17 (agamous-like 17)O.I.H.G.S.X.
0.2935.50.78HU05I16u_atHU05I16u--3e+0At4g28340unknown proteinO.I.H.G.S.X.
0.2935.50.83AF026538_atAF026538ABA-responsive protein-7e-1At2g37580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2732.10.77Contig14119_atContig14119--3e-5At1g49010myb family transcription factorO.I.H.G.S.X.
0.2732.10.87Contig6433_atContig6433--5e-1At5g66460(1-4)-beta-mannan endohydrolase, putativeO.I.H.G.S.X.
0.2528.90.79HT10N20u_s_atHT10N20u--5e+0At5g15620F-box family proteinO.I.H.G.S.X.
0.2528.90.87Contig8940_s_atContig8940--2e-3At3g02000ROXY1O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.396.4GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.792.7GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
2.792.7GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
2.692.3GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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