CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HVSMEf0003F23r2_at

Gene name
Homology with Arabidopsis Similar to At5g09570: - (HF=9e-1)

Module size 6 genes

NF 0.49

%ile 68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.87 HVSMEf0003F23r2_at HVSMEf0003F23r2 - - 9e-1 At5g09570 - O.I. H.G. S.X.
0.50 66.9 0.84 Contig4931_at Contig4931 - - 1e-22 At1g75850 VPS35B (VPS35 HOMOLOG B) O.I. H.G. S.X.
0.44 58.9 0.88 Contig9481_at Contig9481 - - 2e+0 At5g60830 AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70) O.I. H.G. S.X.
0.40 53.1 0.88 Contig6238_s_at Contig6238 - - 1e-7 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) O.I. H.G. S.X.
0.33 42.6 0.87 Contig6233_s_at Contig6233 - - 3e-8 At5g08790 ATAF2 O.I. H.G. S.X.
0.29 35.5 0.87 Contig12297_at Contig12297 - - 1e+0 At3g13190 myosin heavy chain-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 96.4 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8 95.7 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5 95.1 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4 94.8 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3 94.6 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1 94.1 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8 93.1 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
2.7 92.7 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
2.7 92.7 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
2.6 92.3 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the rice gene, Os03g0845800, orthologous to the query gene, HVSMEf0003F23r2_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.70 88.4 Os03g0845800 At5g09570 - Hypothetical protein 2e+0 At1g04445 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.43 55.4 Os08g0100800 At5g09570 - Homeodomain-like containing protein 3e+0 At5g56450 mitochondrial substrate carrier family protein O.I. H.G. S.X.
0.29 31.1 Os03g0118900 At5g09570 - ARM repeat fold domain containing protein 9e-1 At3g50870 MNP (MONOPOLE) O.I. H.G. S.X.
0.17 12.6 Os06g0224900 At5g09570 - Mitochodrial transcription terminationfactor-related family protein 7e-1 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein O.I. H.G. S.X.
0.15 10.3 Os03g0423000 At5g09570 - Cyclin-like F-box domain containing protein 2e+0 At4g14830 unknown protein O.I. H.G. S.X.
0.13 8.2 Os11g0143500 At5g09570 - L-Galactono-1,4-lactone dehydrogenase 3e-13 At3g47930 ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE) O.I. H.G. S.X.
0.13 8.2 Os12g0224500 At5g09570 - Zn-finger-like, PHD finger domain containingprotein 3e-3 At5g21280 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.12 7.2 Os03g0826400 At5g09570 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 7e-10 At3g47120 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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