Co-expression analysis

Gene ID	HVSMEf0003F23r2_at
Gene name
Homology with Arabidopsis	Similar to At5g09570: - (HF=9e-1)
Module size	6 genes
NF	0.49
%ile	68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.87	HVSMEf0003F23r2_at	HVSMEf0003F23r2	-	-	9e-1	At5g09570	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.84	Contig4931_at	Contig4931	-	-	1e-22	At1g75850	VPS35B (VPS35 HOMOLOG B)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.88	Contig9481_at	Contig9481	-	-	2e+0	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.88	Contig6238_s_at	Contig6238	-	-	1e-7	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.87	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.87	Contig12297_at	Contig12297	-	-	1e+0	At3g13190	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	96.4	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.7	92.7	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.66873.1.S1_at, orthologous to the query gene, HVSMEf0003F23r2_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.66873.1.S1_at	At5g09570	-	-	1e-2	At3g49300	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.06	9.0	Gma.2265.1.S1_at	At5g09570	-	-	1e-75	At5g21070	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	9.0	Gma.4754.1.S1_at	At5g09570	-	-	1e-20	At5g19150	carbohydrate kinase family	O.I.	H.G.	S.X.	Please select
0.04	7.0	GmaAffx.81423.1.S1_at	At5g09570	-	-	1e-9	At1g28540	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	GmaAffx.35729.2.S1_at	At5g09570	-	-	1e-1	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.00	1.4	GmaAffx.25652.2.S1_at	At5g09570	-	-	1e+0	At4g15710	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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