Co-expression analysis

Gene ID HVSMEf0003F23r2_at
Gene name
Homology with ArabidopsisSimilar to At5g09570: - (HF=9e-1)
Module size 6 genes
NF 0.49
%ile 68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.87HVSMEf0003F23r2_atHVSMEf0003F23r2--9e-1At5g09570-O.I.H.G.S.X.
0.5066.90.84Contig4931_atContig4931--1e-22At1g75850VPS35B (VPS35 HOMOLOG B)O.I.H.G.S.X.
0.4458.90.88Contig9481_atContig9481--2e+0At5g60830AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)O.I.H.G.S.X.
0.4053.10.88Contig6238_s_atContig6238--1e-7At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)O.I.H.G.S.X.
0.3342.60.87Contig6233_s_atContig6233--3e-8At5g08790ATAF2O.I.H.G.S.X.
0.2935.50.87Contig12297_atContig12297--1e+0At3g13190myosin heavy chain-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.396.4GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.792.7GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
2.792.7GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
2.692.3GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g09570, orthologous to the query gene, HVSMEf0003F23r2_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3643.6At5g09570830816-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOO.I.H.G.S.X.
0.7184.2At5g08030830697glycerophosphoryl diester phosphodiesterase family proteinF:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:endomembrane system;BOPMFAVO.I.H.G.S.X.
0.7184.2At5g17340831600unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.7083.5At1g07340837245ATSTP2 (SUGAR TRANSPORTER 2)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, monosaccharide transmembrane transporter activity;P:pollen development, monosaccharide transport;C:integral to plasma membrane, membrane;FBMPOAO.I.H.G.S.X.
0.6882.2At5g43340834352PHT6phosphate transporterO.I.H.G.S.X.
0.6781.6At4g10260826617pfkB-type carbohydrate kinase family proteinF:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:cellular_component unknown;BOPAMFO.I.H.G.S.X.
0.6781.6At5g40260834024nodulin MtN3 family proteinF:unknown;P:pollen wall assembly;C:plasma membrane, membrane;PMOBO.I.H.G.S.X.
0.6680.1At4g36350829787PAP25 (PURPLE ACID PHOSPHATASE 25)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cell wall;PBOMFAO.I.H.G.S.X.
0.6579.6At1g61630842459equilibrative nucleoside transporter, putative (ENT7)F:nucleoside transmembrane transporter activity;P:transport;C:plasma membrane;MOPFBO.I.H.G.S.X.
0.6579.6At4g24890828591PAP24 (PURPLE ACID PHOSPHATASE 24)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cell wall;PBOMFO.I.H.G.S.X.
0.6378.1At1g79800844319plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO.I.H.G.S.X.
0.6277.3At3g50580824222unknown proteinF:unknown;P:unknown;C:endomembrane system;MOBPFVAO.I.H.G.S.X.
0.6176.7At5g53510835433ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9)oligopeptide transporterO.I.H.G.S.X.
0.5873.8At1g05040839338unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5673.0At5g28470832936transporterF:transporter activity;P:oligopeptide transport;C:membrane;PMBFOO.I.H.G.S.X.
0.5673.0At2g39820818569eukaryotic translation initiation factor 6, putative / eIF-6, putativeF:ribosome binding, translation initiation factor activity;P:translational initiation, mature ribosome assembly;C:cellular_component unknown;AOMFPO.I.H.G.S.X.
0.5267.4At4g26440828750WRKY34 (WRKY DNA-BINDING PROTEIN 34)member of WRKY Transcription Factor; Group IO.I.H.G.S.X.
0.5267.4At5g46795834723MSP2 (microspore-specific promoter 2)F:molecular_function unknown;P:pollen development;C:chloroplast;MPOO.I.H.G.S.X.
0.4862.5At3g14450820668CID9 (CTC-Interacting Domain 9)RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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