Co-expression analysis

Gene ID HVSMEf0002H19r2_at
Gene name
Homology with ArabidopsisSimilar to At2g43610: glycoside hydrolase family 19 protein (HF=1e+0)
Module size 6 genes
NF 0.14
%ile 16.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.89HVSMEf0002H19r2_atHVSMEf0002H19r2--1e+0At2g43610glycoside hydrolase family 19 proteinO.I.H.G.S.X.
0.2326.10.92HZ56B02r_atHZ56B02r--3e+0At3g57250emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.108.40.93HVSMEa0002E06r2_s_atHVSMEa0002E06r2--2e-1At3g52850VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)O.I.H.G.S.X.
0.108.40.93HS17P17u_atHS17P17u--2e-1At2g12405unknown proteinO.I.H.G.S.X.
0.108.40.94rbasd18c22_atrbasd18c22--1e+0At1g60250zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.054.10.93rbaal31p03_s_atrbaal31p03--2e-22At2g47170ARF1A1CO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5572.00.90HVSMEc0014M18r2_atHVSMEc0014M18r2--1e+0At3g18870mitochondrial transcription termination factor-related / mTERF-relatedO.I.H.G.S.X.
0.5066.90.90HS06L16u_x_atHS06L16u--1e+1At5g65740protein binding / zinc ion bindingO.I.H.G.S.X.
0.4458.90.92HU11D20u_atHU11D20u--9e-1At2g45060-O.I.H.G.S.X.
0.4356.40.91HT12G02u_atHT12G02u--2e+0At2g34530unknown proteinO.I.H.G.S.X.
0.4356.40.93HS09I11u_atHS09I11u--1e-6At3g05570unknown proteinO.I.H.G.S.X.
0.4053.10.89S0000800179B07F1_atS0000800179B07F1--4e-6At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.
0.4053.10.91HO13A14S_atHO13A14S--3e+0At3g15850FAD5 (FATTY ACID DESATURASE 5)O.I.H.G.S.X.
0.4053.10.94HV02N11u_atHV02N11u--5e+0At2g26370MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.4053.10.94HT12J09u_x_atHT12J09u--6e-1At3g43490zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.3849.50.90HVSMEf0010L20r2_atHVSMEf0010L20r2--8e-1At1g50320ATHXO.I.H.G.S.X.
0.3849.50.92HU09D05u_atHU09D05u--1e+0At4g08073unknown proteinO.I.H.G.S.X.
0.3647.10.91HT08H02u_x_atHT08H02u--3e+0At5g67500VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)O.I.H.G.S.X.
0.3647.10.91HD08L01r_x_atHD08L01r--3e+0At5g20165unknown proteinO.I.H.G.S.X.
0.3342.60.90HT06L23u_atHT06L23u--5e-6At1g08830CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.
0.3240.30.90HU13L14u_atHU13L14u--1e+1At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.3240.30.90HVSMEa0005E19f_x_atHVSMEa0005E19f--1e+1At5g10880tRNA synthetase-related / tRNA ligase-relatedO.I.H.G.S.X.
0.3138.60.90HA10C11r_atHA10C11r--6e+0At4g05620F-box family proteinO.I.H.G.S.X.
0.2935.50.91HS18J04u_atHS18J04u--6e-1At1g01400unknown proteinO.I.H.G.S.X.
0.2935.50.92HV_CEa0013H01r2_atHV_CEa0013H01r2--1e+0At2g46100unknown proteinO.I.H.G.S.X.
0.2630.40.88HM13L06r_atHM13L06r--7e-1At5g63030glutaredoxin, putativeO.I.H.G.S.X.
0.2528.90.91HD07P18r_x_atHD07P18r--3e+0At1g35230AGP5 (ARABINOGALACTAN-PROTEIN 5)O.I.H.G.S.X.
0.2528.90.92HF21N20r_x_atHF21N20r--2e-1At1g08660glycosyl transferase family 29 protein / sialyltransferase family proteinO.I.H.G.S.X.
0.2528.90.94HM14G18r_atHM14G18r--8e+0At4g21902unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.5GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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