Co-expression analysis

Gene ID HVSMEf0002H19r2_at
Gene name
Homology with ArabidopsisSimilar to At2g43610: glycoside hydrolase family 19 protein (HF=1e+0)
Module size 6 genes
NF 0.14
%ile 16.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.89HVSMEf0002H19r2_atHVSMEf0002H19r2--1e+0At2g43610glycoside hydrolase family 19 proteinO.I.H.G.S.X.
0.2326.10.92HZ56B02r_atHZ56B02r--3e+0At3g57250emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.108.40.93HVSMEa0002E06r2_s_atHVSMEa0002E06r2--2e-1At3g52850VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)O.I.H.G.S.X.
0.108.40.93HS17P17u_atHS17P17u--2e-1At2g12405unknown proteinO.I.H.G.S.X.
0.108.40.94rbasd18c22_atrbasd18c22--1e+0At1g60250zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.054.10.93rbaal31p03_s_atrbaal31p03--2e-22At2g47170ARF1A1CO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.5GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.5605.1.S1_at, orthologous to the query gene, HVSMEf0002H19r2_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.2Zm.5605.1.S1_atAt2g43610--1e+0At1g18680HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.6077.8Zm.5604.1.A1_atAt2g43610TPR domain containing protein-3e-2At1g08570ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)O.I.H.G.S.X.
0.5571.6Zm.5600.2.A1_x_atAt2g43610--2e+0At1g19050ARR7 (RESPONSE REGULATOR 7)O.I.H.G.S.X.
0.115.3Zm.12177.1.A1_atAt2g43610hypothetical protein LOC100193797-3e-1At2g05752unknown proteinO.I.H.G.S.X.
0.020.7Zm.4035.1.A1_atAt2g43610hypothetical protein LOC100279841-9e-4At3g11110zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.000.1Zm.17981.1.A1_atAt2g43610hypothetical protein LOC100277738-5e+0At2g47520AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage