Co-expression analysis

Gene ID	HVSMEf0002H19r2_at
Gene name
Homology with Arabidopsis	Similar to At2g43610: glycoside hydrolase family 19 protein (HF=1e+0)
Module size	6 genes
NF	0.14
%ile	16.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.89	HVSMEf0002H19r2_at	HVSMEf0002H19r2	-	-	1e+0	At2g43610	glycoside hydrolase family 19 protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	HZ56B02r_at	HZ56B02r	-	-	3e+0	At3g57250	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.93	HVSMEa0002E06r2_s_at	HVSMEa0002E06r2	-	-	2e-1	At3g52850	VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.93	HS17P17u_at	HS17P17u	-	-	2e-1	At2g12405	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.94	rbasd18c22_at	rbasd18c22	-	-	1e+0	At1g60250	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.93	rbaal31p03_s_at	rbaal31p03	-	-	2e-22	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.5	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, Ta.21438.1.A1_at, orthologous to the query gene, HVSMEf0002H19r2_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.21438.1.A1_at	At2g43610	-	-	6e+0	At3g26150	CYP71B16	O.I.	H.G.	S.X.	Please select
0.77	90.8	TaAffx.116369.1.S1_x_at	At2g43610	-	-	5e+0	At5g41440	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	TaAffx.116369.1.S1_s_at	At2g43610	-	-	5e+0	At5g41440	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.21438.2.A1_x_at	At2g43610	-	-	1e+1	At5g42770	-	O.I.	H.G.	S.X.	Please select
0.63	83.1	TaAffx.80229.1.S1_at	At2g43610	-	-	1e+0	At3g29170	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.24475.1.S1_at	At2g43610	Glucan endo-1,3-beta-D-glucosidase	-	1e+0	At2g45670	calcineurin B subunit-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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