Co-expression analysis

Gene ID HVSMEf0001F23r2_x_at
Gene name
Homology with ArabidopsisSimilar to At4g26030: transcription factor (HF=9e+0)
Module size 7 genes
NF 0.43
%ile 60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.93HVSMEf0001F23r2_x_atHVSMEf0001F23r2--9e+0At4g26030transcription factorO.I.H.G.S.X.
0.4863.20.93Contig3801_atContig3801--4e-26At1g69840band 7 family proteinO.I.H.G.S.X.
0.4458.90.95Contig10402_atContig10402--2e-1At3g54780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4053.10.93Contig14946_atContig14946--2e-1At2g46340SPA1 (SUPPRESSOR OF PHYA-105 1)O.I.H.G.S.X.
0.3545.10.95Contig4745_atContig4745--2e+0At5g37520unknown proteinO.I.H.G.S.X.
0.3342.60.95HVSMEi0003H24r2_s_atHVSMEi0003H24r2--1e+1At3g55490-O.I.H.G.S.X.
0.2224.20.93Contig10175_atContig10175--1e-7At5g23550-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.096.0GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.194.1GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.692.3GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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