Co-expression analysis

Gene ID	HVSMEf0001F23r2_x_at
Gene name
Homology with Arabidopsis	Similar to At4g26030: transcription factor (HF=9e+0)
Module size	7 genes
NF	0.43
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.93	HVSMEf0001F23r2_x_at	HVSMEf0001F23r2	-	-	9e+0	At4g26030	transcription factor	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.93	Contig3801_at	Contig3801	-	-	4e-26	At1g69840	band 7 family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig10402_at	Contig10402	-	-	2e-1	At3g54780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig14946_at	Contig14946	-	-	2e-1	At2g46340	SPA1 (SUPPRESSOR OF PHYA-105 1)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig4745_at	Contig4745	-	-	2e+0	At5g37520	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	HVSMEi0003H24r2_s_at	HVSMEi0003H24r2	-	-	1e+1	At3g55490	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.93	Contig10175_at	Contig10175	-	-	1e-7	At5g23550	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.6	92.3	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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