Co-expression analysis

Gene ID	HVSMEc0011O16r2_at
Gene name
Homology with Arabidopsis	Similar to At1g09932: phosphoglycerate/bisphosphoglycerate mutase-related (HF=3e-1)
Module size	6 genes
NF	0.39
%ile	52.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.93	HVSMEc0011O16r2_at	HVSMEc0011O16r2	-	-	3e-1	At1g09932	phosphoglycerate/bisphosphoglycerate mutase-related	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.91	Contig14089_at	Contig14089	-	-	2e-8	At3g50790	late embryogenesis abundant protein, putative / LEA protein, putative	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.91	Contig9618_s_at	Contig9618	-	-	1e-5	At5g34850	PAP26 (PURPLE ACID PHOSPHATASE 26)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.93	Contig10304_at	Contig10304	-	-	3e+0	Atmg00750	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig14295_at	Contig14295	-	-	2e+1	At4g15460	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.91	HV_CEa0013M08r2_s_at	HV_CEa0013M08r2	-	-	2e+0	At5g38020	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.5	99.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.7	99.2	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.5	99.2	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.0	97.9	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.9	97.9	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
4.1	96.2	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
3.7	95.5	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage