Co-expression analysis

Gene ID	HVSMEc0011A22r2_at
Gene name
Homology with Arabidopsis	Similar to At2g41920: protein kinase family protein (HF=1e+0)
Module size	9 genes
NF	0.55
%ile	76.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.1	0.92	HVSMEc0011A22r2_at	HVSMEc0011A22r2	-	-	1e+0	At2g41920	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.74	89.1	0.92	HVSMEc0013C11r2_at	HVSMEc0013C11r2	-	-	7e-2	At2g05600	-	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.92	HVSMEc0010O09r2_at	HVSMEc0010O09r2	-	-	1e+0	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.91	HK05N20r_at	HK05N20r	-	-	3e+0	Atcg00790	-	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.92	HVSMEf0004A21r2_at	HVSMEf0004A21r2	-	-	2e-1	At2g14045	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.92	Contig10750_at	Contig10750	-	-	1e-4	At1g51600	TIFY2A	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.92	Contig25750_at	Contig25750	-	-	4e+0	At5g07880	SNAP29	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.92	Contig22141_at	Contig22141	-	-	3e+0	At3g07440	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig15729_at	Contig15729	-	-	3e-2	At3g11280	myb family transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.4	99.0	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.9	98.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.7	96.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.2	96.3	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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