Co-expression analysis

Gene ID	HVSMEc0010O09r2_at
Gene name
Homology with Arabidopsis	Similar to At5g28630: glycine-rich protein (HF=1e+0)
Module size	11 genes
NF	0.63
%ile	84.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.92	HVSMEc0010O09r2_at	HVSMEc0010O09r2	-	-	1e+0	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.94	Contig15729_at	Contig15729	-	-	3e-2	At3g11280	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.93	Contig7120_at	Contig7120	-	-	4e-18	At1g55880	pyridoxal-5'-phosphate-dependent enzyme, beta family protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.95	Contig327_s_at	Contig327	-	-	2e-2	At2g23310	ATRER1C1	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.95	Contig4455_at	Contig4455	-	-	5e-1	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig6638_at	Contig6638	-	-	1e+0	At1g21880	LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.95	Contig11988_at	Contig11988	-	-	1e-1	At3g18490	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.95	Contig3480_at	Contig3480	-	-	4e-1	At5g16660	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig14638_at	Contig14638	-	-	4e-35	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig22141_at	Contig22141	-	-	3e+0	At3g07440	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.94	HK04P18r_s_at	HK04P18r	CesA6 protein	-	2e+1	Atcg00130	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.8	99.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
18.7	99.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.4	99.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.3	99.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.6	95.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5	95.1	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.4	94.8	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage