Co-expression analysis

Gene ID	HVSMEc0009K16f_s_at
Gene name
Homology with Arabidopsis	Similar to At1g28590: lipase, putative (HF=5e+0)
Module size	14 genes
NF	0.52
%ile	72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	81.4	0.92	HVSMEc0009K16f_s_at	HVSMEc0009K16f	-	-	5e+0	At1g28590	lipase, putative	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.95	Contig14275_at	Contig14275	-	-	4e-2	At4g21720	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig7285_s_at	Contig7285	-	-	2e-4	At5g17670	hydrolase, acting on ester bonds	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.95	Contig18014_at	Contig18014	-	-	2e-1	At3g55605	mitochondrial glycoprotein family protein / MAM33 family protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.94	Contig21913_at	Contig21913	-	-	5e+0	At3g63060	EDL3 (EID1-like 3)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.95	Contig19924_at	Contig19924	-	-	9e-1	At5g28640	AN3 (ANGUSTIFOLIA 3)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig16101_at	Contig16101	-	-	7e-13	At3g06950	tRNA pseudouridine synthase family protein	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.94	Contig24906_at	Contig24906	-	-	2e+0	At5g09370	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.95	HVSMEm0007N12r2_at	HVSMEm0007N12r2	-	-	3e+0	At3g16120	dynein light chain, putative	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.95	Contig16708_at	Contig16708	-	-	1e+0	At5g09240	transcriptional coactivator p15 (PC4) family protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.95	Contig13426_at	Contig13426	-	-	8e-6	At2g45695	-	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.94	Contig11660_at	Contig11660	-	-	2e-5	At5g20170	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	EBro03_SQ005_P18_x_at	EBro03_SQ005_P18	-	-	2e-21	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig13000_at	Contig13000	-	-	8e-58	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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