Co-expression analysis

Gene ID HVSMEc0001C18f2_s_at
Gene name
Homology with ArabidopsisSimilar to At2g43018: CPuORF17 (Conserved peptide upstream open reading frame 17) (HF=7e-1)
Module size 6 genes
NF 0.33
%ile 43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.91HVSMEc0001C18f2_s_atHVSMEc0001C18f2--7e-1At2g43018CPuORF17 (Conserved peptide upstream open reading frame 17)O.I.H.G.S.X.
0.4053.10.93Contig5562_s_atContig5562--1e-3At3g51550FER (FERONIA)O.I.H.G.S.X.
0.3849.50.92Contig2616_atContig2616--2e+0At5g11990proline-rich family proteinO.I.H.G.S.X.
0.2732.10.93Contig2833_atContig2833--9e-3At5g15090VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)O.I.H.G.S.X.
0.2528.90.93Contig6811_s_atContig6811--5e-1At1g26470-O.I.H.G.S.X.
0.1412.90.93Contig5927_atContig5927--1e-1At1g22480plastocyanin-like domain-containing proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5066.90.87Contig5754_atContig5754--3e-2At1g13380unknown proteinO.I.H.G.S.X.
0.5066.90.88Contig8174_atContig8174--2e-12At3g13550FUS9 (FUSCA 9)O.I.H.G.S.X.
0.5066.90.91HV_CEb0020C01r2_atHV_CEb0020C01r2--8e+0At3g51030ATTRX1O.I.H.G.S.X.
0.5066.90.91HVSMEl0014E16r2_atHVSMEl0014E16r2--2e+1At4g03210XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)O.I.H.G.S.X.
0.5066.90.92Contig1492_atContig1492--4e-27At1g30230elongation factor 1-beta / EF-1-betaO.I.H.G.S.X.
0.4458.90.88Contig3169_atContig3169--2e-13At1g16920ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B)O.I.H.G.S.X.
0.4053.10.90EBpi03_SQ003_J22_atEBpi03_SQ003_J22--2e+0At4g05100AtMYB74 (myb domain protein 74)O.I.H.G.S.X.
0.3849.50.90Contig969_atContig969--1e-72At1g70490ARFA1DO.I.H.G.S.X.
0.3647.10.79Contig14829_atContig14829--6e-3At1g28560SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2)O.I.H.G.S.X.
0.3647.10.95Contig15349_atContig15349--2e-1At5g38730pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3545.10.88Contig25717_atContig25717--8e-3At5g02040PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)O.I.H.G.S.X.
0.3342.60.86Contig9615_atContig9615--1e+0At1g35880-O.I.H.G.S.X.
0.3342.60.91Contig10457_atContig10457--2e-5At1g30000glycoside hydrolase family 47 proteinO.I.H.G.S.X.
0.3342.60.92HA24C19r_s_atHA24C19r--2e+0At3g52740unknown proteinO.I.H.G.S.X.
0.3138.60.87Contig5994_s_atContig5994--3e+0At5g56060ATP binding / nucleotide binding / phenylalanine-tRNA ligaseO.I.H.G.S.X.
0.3138.60.87Contig20812_atContig20812--6e+0At5g50375CPI1 (CYCLOPROPYL ISOMERASE)O.I.H.G.S.X.
0.3138.60.89rbags12k11_s_atrbags12k11--1e-6At3g25540LAG1O.I.H.G.S.X.
0.3138.60.91Contig6086_atContig6086--4e-11At1g32220binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.3138.60.92Contig15391_atContig15391--2e-9At2g42280basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2935.50.88Contig12222_atContig12222NBS-LRR disease resistance protein homologue-7e-1At4g26470calcium ion bindingO.I.H.G.S.X.
0.2835.50.84Contig6495_atContig6495--7e-1At3g03870unknown proteinO.I.H.G.S.X.
0.2732.10.90Contig13400_s_atContig13400--6e-5At3g04350unknown proteinO.I.H.G.S.X.
0.2732.10.85HW09H22u_atHW09H22u--1e+0At4g13230late embryogenesis abundant domain-containing protein / LEA domain-containing proteinO.I.H.G.S.X.
0.2732.10.90Contig3393_atContig3393--2e+0At5g21940unknown proteinO.I.H.G.S.X.
0.2630.40.89Contig14660_atContig14660--5e-1At4g28830methyltransferase/ nucleic acid bindingO.I.H.G.S.X.
0.2528.90.80Contig5071_s_atContig5071--4e+0At3g20750zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.2528.90.94Contig5612_s_atContig5612--3e-3At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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