CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HVSMEc0001C18f2_s_at

Gene name
Homology with Arabidopsis Similar to At2g43018: CPuORF17 (Conserved peptide upstream open reading frame 17) (HF=7e-1)

Module size 6 genes

NF 0.33

%ile 43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 78.7 0.91 HVSMEc0001C18f2_s_at HVSMEc0001C18f2 - - 7e-1 At2g43018 CPuORF17 (Conserved peptide upstream open reading frame 17) O.I. H.G. S.X.
0.40 53.1 0.93 Contig5562_s_at Contig5562 - - 1e-3 At3g51550 FER (FERONIA) O.I. H.G. S.X.
0.38 49.5 0.92 Contig2616_at Contig2616 - - 2e+0 At5g11990 proline-rich family protein O.I. H.G. S.X.
0.27 32.1 0.93 Contig2833_at Contig2833 - - 9e-3 At5g15090 VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) O.I. H.G. S.X.
0.25 28.9 0.93 Contig6811_s_at Contig6811 - - 5e-1 At1g26470 - O.I. H.G. S.X.
0.14 12.9 0.93 Contig5927_at Contig5927 - - 1e-1 At1g22480 plastocyanin-like domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 97.7 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.3 96.4 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.7 95.5 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.4 94.8 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.3 94.6 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.1 94.1 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the maize gene, Zm.974.1.A1_at, orthologous to the query gene, HVSMEc0001C18f2_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 Zm.974.1.A1_at At2g43018 - - 6e-1 At5g47060 senescence-associated protein-related O.I. H.G. S.X.
0.61 79.5 Zm.17834.1.S1_at At2g43018 hypothetical protein LOC100276988 - 4e-1 At2g28230 - O.I. H.G. S.X.
0.53 69.1 Zm.18689.1.A1_at At2g43018 hypothetical protein LOC100191765 /// hypothetical protein LOC100217172 - 9e+0 At2g18380 transcription factor O.I. H.G. S.X.
0.44 55.7 Zm.15205.1.A1_at At2g43018 - - 2e+1 At5g57860 ubiquitin family protein O.I. H.G. S.X.
0.43 52.8 Zm.1860.1.A1_at At2g43018 gibberellin-regulated protein 2 - 2e+0 At1g22690 gibberellin-responsive protein, putative O.I. H.G. S.X.
0.43 52.8 Zm.1743.1.A1_at At2g43018 IAA19 - auxin-responsive Aux/IAA family member - 2e-9 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) O.I. H.G. S.X.
0.40 48.5 Zm.9314.1.A1_at At2g43018 hypothetical protein LOC100192585 - 2e-31 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) O.I. H.G. S.X.
0.38 44.2 Zm.11703.1.A1_at At2g43018 - - 1e+0 At3g07860 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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