Co-expression analysis

Gene ID HVSMEc0001C18f2_s_at
Gene name
Homology with ArabidopsisSimilar to At2g43018: CPuORF17 (Conserved peptide upstream open reading frame 17) (HF=7e-1)
Module size 6 genes
NF 0.33
%ile 43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.91HVSMEc0001C18f2_s_atHVSMEc0001C18f2--7e-1At2g43018CPuORF17 (Conserved peptide upstream open reading frame 17)O.I.H.G.S.X.
0.4053.10.93Contig5562_s_atContig5562--1e-3At3g51550FER (FERONIA)O.I.H.G.S.X.
0.3849.50.92Contig2616_atContig2616--2e+0At5g11990proline-rich family proteinO.I.H.G.S.X.
0.2732.10.93Contig2833_atContig2833--9e-3At5g15090VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)O.I.H.G.S.X.
0.2528.90.93Contig6811_s_atContig6811--5e-1At1g26470-O.I.H.G.S.X.
0.1412.90.93Contig5927_atContig5927--1e-1At1g22480plastocyanin-like domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.974.1.A1_at, orthologous to the query gene, HVSMEc0001C18f2_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.8Zm.974.1.A1_atAt2g43018--6e-1At5g47060senescence-associated protein-relatedO.I.H.G.S.X.
0.6179.5Zm.17834.1.S1_atAt2g43018hypothetical protein LOC100276988-4e-1At2g28230-O.I.H.G.S.X.
0.5369.1Zm.18689.1.A1_atAt2g43018hypothetical protein LOC100191765 /// hypothetical protein LOC100217172-9e+0At2g18380transcription factorO.I.H.G.S.X.
0.4455.7Zm.15205.1.A1_atAt2g43018--2e+1At5g57860ubiquitin family proteinO.I.H.G.S.X.
0.4352.8Zm.1860.1.A1_atAt2g43018gibberellin-regulated protein 2-2e+0At1g22690gibberellin-responsive protein, putativeO.I.H.G.S.X.
0.4352.8Zm.1743.1.A1_atAt2g43018IAA19 - auxin-responsive Aux/IAA family member-2e-9At4g14550IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)O.I.H.G.S.X.
0.4048.5Zm.9314.1.A1_atAt2g43018hypothetical protein LOC100192585-2e-31At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.3844.2Zm.11703.1.A1_atAt2g43018--1e+0At3g07860unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage