Co-expression analysis

Gene ID HVSMEc0001C18f2_s_at
Gene name
Homology with ArabidopsisSimilar to At2g43018: CPuORF17 (Conserved peptide upstream open reading frame 17) (HF=7e-1)
Module size 6 genes
NF 0.33
%ile 43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.91HVSMEc0001C18f2_s_atHVSMEc0001C18f2--7e-1At2g43018CPuORF17 (Conserved peptide upstream open reading frame 17)O.I.H.G.S.X.
0.4053.10.93Contig5562_s_atContig5562--1e-3At3g51550FER (FERONIA)O.I.H.G.S.X.
0.3849.50.92Contig2616_atContig2616--2e+0At5g11990proline-rich family proteinO.I.H.G.S.X.
0.2732.10.93Contig2833_atContig2833--9e-3At5g15090VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)O.I.H.G.S.X.
0.2528.90.93Contig6811_s_atContig6811--5e-1At1g26470-O.I.H.G.S.X.
0.1412.90.93Contig5927_atContig5927--1e-1At1g22480plastocyanin-like domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1617036_at, orthologous to the query gene, HVSMEc0001C18f2_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81617036_atAt2g43018hypothetical protein LOC100243315-2e-5At3g21070NADK1 (NAD KINASE 1)O.I.H.G.S.X.
0.3954.91617021_atAt2g43018hypothetical LOC100255231-6e-2At4g12060Clp amino terminal domain-containing proteinO.I.H.G.S.X.
0.3751.71616210_atAt2g43018hypothetical protein LOC100242447-1e+0At1g70410carbonic anhydrase, putative / carbonate dehydratase, putativeO.I.H.G.S.X.
0.3548.51607088_atAt2g43018hypothetical protein LOC100254860-5e-22At5g15640mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.3345.71606716_atAt2g43018hypothetical protein LOC100249200-4e-10At1g54220dihydrolipoamide S-acetyltransferase, putativeO.I.H.G.S.X.
0.3243.11609392_s_atAt2g43018hypothetical protein LOC100242395-2e-47At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.3039.41621291_s_atAt2g43018hypothetical protein LOC100267365-1e-16At1g36050unknown proteinO.I.H.G.S.X.
0.3039.41620591_atAt2g43018hypothetical protein LOC100253168-1e-10At5g51050mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.2937.71611259_atAt2g43018hypothetical protein LOC100247271-2e-2At2g26970exonuclease family proteinO.I.H.G.S.X.
0.2937.71611843_atAt2g43018hypothetical protein LOC100264807-2e-8At5g48870SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)O.I.H.G.S.X.
0.2837.71620445_atAt2g43018hypothetical protein LOC100244526-2e-12At2g18250ATCOAD (4-phosphopantetheine adenylyltransferase)O.I.H.G.S.X.
0.2327.51608557_atAt2g43018hypothetical protein LOC100261282-9e-20At3g52730ubiquinol-cytochrome C reductase UQCRX/QCR9-like family proteinO.I.H.G.S.X.
0.2225.61611249_s_atAt2g43018hypothetical protein LOC100255334-6e-29At1g51410cinnamyl-alcohol dehydrogenase, putative (CAD)O.I.H.G.S.X.
0.1920.91614536_atAt2g43018hypothetical protein LOC100256194-1e-8At1g04340lesion inducing protein-relatedO.I.H.G.S.X.
0.1920.91620055_atAt2g43018hypothetical protein LOC100243774-2e+0At1g79310AtMC7 (metacaspase 7)O.I.H.G.S.X.
0.1515.61619182_atAt2g43018hypothetical protein LOC100250963-2e-1At3g05760nucleic acid binding / zinc ion bindingO.I.H.G.S.X.
0.1515.61609192_atAt2g43018hypothetical protein LOC100265964-5e-6At4g16566histidine triad family protein / HIT family proteinO.I.H.G.S.X.
0.1515.61607085_atAt2g43018hypothetical protein LOC100263760-2e-10At2g38560TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)O.I.H.G.S.X.
0.1414.41606896_atAt2g43018hypothetical protein LOC100251845-1e-6At4g21105cytochrome-c oxidase/ electron carrierO.I.H.G.S.X.
0.1313.31608047_atAt2g43018hypothetical protein LOC100267805-1e-5At3g10260reticulon family proteinO.I.H.G.S.X.
0.1212.11618931_atAt2g43018hypothetical protein LOC100265402-2e-31At3g09840CDC48 (CELL DIVISION CYCLE 48)O.I.H.G.S.X.
0.1010.31619061_atAt2g43018hypothetical protein LOC100245943-5e-57At3g26020serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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