Co-expression analysis

Gene ID	HVSMEc0001C18f2_s_at
Gene name
Homology with Arabidopsis	Similar to At2g43018: CPuORF17 (Conserved peptide upstream open reading frame 17) (HF=7e-1)
Module size	6 genes
NF	0.33
%ile	43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.91	HVSMEc0001C18f2_s_at	HVSMEc0001C18f2	-	-	7e-1	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig5562_s_at	Contig5562	-	-	1e-3	At3g51550	FER (FERONIA)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.92	Contig2616_at	Contig2616	-	-	2e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.93	Contig2833_at	Contig2833	-	-	9e-3	At5g15090	VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig6811_s_at	Contig6811	-	-	5e-1	At1g26470	-	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.93	Contig5927_at	Contig5927	-	-	1e-1	At1g22480	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, Ta.18127.1.A1_at, orthologous to the query gene, HVSMEc0001C18f2_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	Ta.18127.1.A1_at	At2g43018	-	-	2e+0	At1g32975	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.11703.1.S1_at	At2g43018	-	-	8e-2	At1g69260	AFP1 (ABI FIVE BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.57074.1.S1_at	At2g43018	-	-	8e-1	At4g29970	F-box family protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	Ta.26975.1.A1_at	At2g43018	-	-	2e+0	At3g06750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.21131.2.A1_at	At2g43018	-	-	1e+0	At5g65920	U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	Ta.19137.1.A1_at	At2g43018	-	-	1e-1	At1g01490	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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