Co-expression analysis

Gene ID HVSMEc0001C18f2_s_at
Gene name
Homology with ArabidopsisSimilar to At2g43018: CPuORF17 (Conserved peptide upstream open reading frame 17) (HF=7e-1)
Module size 6 genes
NF 0.33
%ile 43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.91HVSMEc0001C18f2_s_atHVSMEc0001C18f2--7e-1At2g43018CPuORF17 (Conserved peptide upstream open reading frame 17)O.I.H.G.S.X.
0.4053.10.93Contig5562_s_atContig5562--1e-3At3g51550FER (FERONIA)O.I.H.G.S.X.
0.3849.50.92Contig2616_atContig2616--2e+0At5g11990proline-rich family proteinO.I.H.G.S.X.
0.2732.10.93Contig2833_atContig2833--9e-3At5g15090VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)O.I.H.G.S.X.
0.2528.90.93Contig6811_s_atContig6811--5e-1At1g26470-O.I.H.G.S.X.
0.1412.90.93Contig5927_atContig5927--1e-1At1g22480plastocyanin-like domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, OsAffx.22980.1.S1_at, orthologous to the query gene, HVSMEc0001C18f2_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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