Co-expression analysis

Gene ID HVSMEb0012O04f_at
Gene name
Homology with ArabidopsisSimilar to At2g40580: protein kinase family protein (HF=1e-1)
Module size 6 genes
NF 0.73
%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.91HVSMEb0012O04f_atHVSMEb0012O04f--1e-1At2g40580protein kinase family proteinO.I.H.G.S.X.
0.8092.50.91HVSMEc0007F14f_atHVSMEc0007F14f--7e+0Atmg01220-O.I.H.G.S.X.
0.6178.70.90HA12O12u_atHA12O12u--2e+0At5g08460GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.6077.30.94HVSMEc0008G05r2_atHVSMEc0008G05r2--4e+0At4g02000unknown proteinO.I.H.G.S.X.
0.5066.90.95HA03H11u_x_atHA03H11u--6e+0At3g22961-O.I.H.G.S.X.
0.4458.90.95HA10M13u_x_atHA10M13u--6e+0At5g46980invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.199.7GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
16.999.6GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
14.799.5GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.399.4GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM261040Dicktoo-deacclimation-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
5.497.5GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
4.997.1GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
4.696.8GSM261039Dicktoo-deacclimation-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
4.696.8GSM261041Dicktoo-deacclimation-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
4.396.4GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage