Co-expression analysis

Gene ID HVSMEb0009P09r2_at
Gene name
Homology with ArabidopsisSimilar to At1g55900: TIM50 (HF=4e+0)
Module size 6 genes
NF 0.58
%ile 80.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96HVSMEb0009P09r2_atHVSMEb0009P09r2--4e+0At1g55900TIM50O.I.H.G.S.X.
0.9198.10.95Contig2951_atContig2951--2e+0At4g30270MERI5B (meristem-5)O.I.H.G.S.X.
0.6077.30.96Contig5965_s_atContig5965--1e+1At3g22120CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN)O.I.H.G.S.X.
0.5066.90.96Contig8538_atContig8538--4e-2At2g04038AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)O.I.H.G.S.X.
0.4356.40.96Contig10837_atContig10837--2e-3At1g55300TAF7 (TBP-ASSOCIATED FACTOR 7)O.I.H.G.S.X.
0.3037.00.96Contig7570_atContig7570--1e-7At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.598.8GSM71153Barke stress and unstress replicate 4GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
8.298.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.998.3GSM71152Barke stress and unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
6.698.2GSM71157Steptoe stress and unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
6.598.2GSM71146OWB-D unstress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
6.498.1GSM71158Steptoe stress and unstress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
6.298.0GSM71151Barke stress and unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
6.298.0GSM71147OWB-D unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
5.797.7GSM71159Steptoe stress and unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
5.697.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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