Co-expression analysis

Gene ID	HVSMEb0009N20r2_at
Gene name
Homology with Arabidopsis	Similar to At3g50960: PLP3a (Phosducin-like protein 3 homolog) (HF=6e+0)
Module size	12 genes
NF	0.39
%ile	53.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	85.5	0.94	HVSMEb0009N20r2_at	HVSMEb0009N20r2	-	-	6e+0	At3g50960	PLP3a (Phosducin-like protein 3 homolog)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig1434_s_at	Contig1434	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	HU13K14u_at	HU13K14u	-	-	4e-2	At2g30530	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig3976_at	Contig3976	-	-	5e+0	At5g33330	RNase H domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig16455_at	Contig16455	-	-	1e-1	At3g46880	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	Contig14264_at	Contig14264	-	-	2e+0	At1g48780	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig119_at	Contig119	-	-	1e-6	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig255_at	Contig255	-	-	4e+0	At3g53670	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig7911_at	Contig7911	-	-	2e-4	At4g28400	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig8495_at	Contig8495	-	-	2e-5	At2g24740	SDG21 (SET DOMAIN GROUP 21)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	HVSMEk0017M22r2_at	HVSMEk0017M22r2	-	-	1e+0	At2g34440	AGL29 (AGAMOUS-LIKE 29)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.3	94.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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