Co-expression analysis

Gene ID	HVSMEb0001J09r2_x_at
Gene name
Homology with Arabidopsis	Similar to At5g45710: RHA1 (ROOT HANDEDNESS 1) (HF=7e+0)
Module size	6 genes
NF	0.10
%ile	12.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.94	HVSMEb0001J09r2_x_at	HVSMEb0001J09r2	-	-	7e+0	At5g45710	RHA1 (ROOT HANDEDNESS 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig22998_at	Contig22998	-	-	2e+0	At2g20270	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	HV_CEb0001K01r2_at	HV_CEb0001K01r2	-	-	4e+0	At4g04680	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig9680_at	Contig9680	-	-	6e-2	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.94	Contig24225_at	Contig24225	-	-	2e-12	At3g10360	APUM4 (Arabidopsis Pumilio 4)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.94	HVSMEg0004N03r2_at	HVSMEg0004N03r2	-	-	2e+0	At3g50360	ATCEN2 (CENTRIN2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM71148	OWB-R unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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