Co-expression analysis

Gene ID	HVSMEa0015E13r2_s_at
Gene name
Homology with Arabidopsis	Similar to At2g10550: - (HF=3e+0)
Module size	6 genes
NF	0.16
%ile	19.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.92	HVSMEa0015E13r2_s_at	HVSMEa0015E13r2	-	-	3e+0	At2g10550	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	HM14G18r_at	HM14G18r	-	-	8e+0	At4g21902	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	HS09A23u_x_at	HS09A23u	-	-	3e+0	At5g20165	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	HC113G05_SK_at	HC113G05_SK	-	-	1e+0	At4g14342	pre-mRNA splicing factor 10 kDa subunit, putative	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig10681_at	Contig10681	-	-	1e-1	At3g19480	D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.95	Contig23458_at	Contig23458	-	-	5e+0	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM372950	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.5	95.1	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.9	93.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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