Co-expression analysis

Gene ID HVSMEa0012N07r2_at
Gene name
Homology with ArabidopsisSimilar to At2g44920: thylakoid lumenal 15 kDa protein, chloroplast (HF=1e-3)
Module size 7 genes
NF 0.06
%ile 8.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4661.00.89HVSMEa0012N07r2_atHVSMEa0012N07r2--1e-3At2g44920thylakoid lumenal 15 kDa protein, chloroplastO.I.H.G.S.X.
0.1615.30.92Contig8089_atContig8089--1e-11At1g03030phosphoribulokinase/uridine kinase family proteinO.I.H.G.S.X.
0.1514.10.92Contig7958_s_atContig7958--7e-8At2g02040PTR2 (PEPTIDE TRANSPORTER 2)O.I.H.G.S.X.
0.1311.60.90Contig13233_atContig13233--5e-1At2g42260UVI4 (UV-B-INSENSITIVE 4)O.I.H.G.S.X.
0.097.40.90Contig11989_atContig11989--2e+0At5g16580BGLU2 (BETA GLUCOSIDASE 2)O.I.H.G.S.X.
0.075.80.90Contig6837_atContig6837--1e-2At5g59030COPT1 (copper transporter 1)O.I.H.G.S.X.
0.021.80.90Contig3605_atContig3605--3e+0At3g55570unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.096.0GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.695.3GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM261041Dicktoo-deacclimation-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
3.093.8GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
2.993.4GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.993.4GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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