Co-expression analysis

Gene ID	HVSMEa0009I06r2_at
Gene name
Homology with Arabidopsis	Similar to At5g59060: unknown protein (HF=9e+0)
Module size	6 genes
NF	0.46
%ile	63.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.96	HVSMEa0009I06r2_at	HVSMEa0009I06r2	-	-	9e+0	At5g59060	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig12938_at	Contig12938	-	-	1e+0	At1g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig11312_at	Contig11312	-	-	1e+1	At5g27050	AGL101	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig9136_at	Contig9136	-	-	1e-5	At3g51140	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig5644_at	Contig5644	-	-	3e-114	At3g58500	PP2A-3 (PROTEIN PHOSPHATASE 2A-3)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig13002_at	Contig13002	-	-	2e-10	At1g45150	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	99.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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