Co-expression analysis

Gene ID	HVSMEa0008L11r2_at
Gene name
Homology with Arabidopsis	Similar to At3g50960: PLP3a (Phosducin-like protein 3 homolog) (HF=2e-1)
Module size	6 genes
NF	0.07
%ile	8.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.67	HVSMEa0008L11r2_at	HVSMEa0008L11r2	-	-	2e-1	At3g50960	PLP3a (Phosducin-like protein 3 homolog)	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.90	Contig6211_at	Contig6211	-	-	8e-9	At1g04630	MEE4 (maternal effect embryo arrest 4)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.86	Contig5810_s_at	Contig5810	-	-	5e-2	At4g23410	TET5 (TETRASPANIN5)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.93	Contig3810_at	Contig3810	-	-	3e-18	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.91	HD07I22r_s_at	HD07I22r	-	-	5e+0	At4g21090	adrenodoxin-like ferredoxin 1	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.79	Contig191_s_at	Contig191	-	-	7e-6	At2g33740	CUTA	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	99.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.9	98.3	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.7	97.7	GSM372983	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.5	97.6	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM372986	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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