Co-expression analysis

Gene ID HVSMEa0007I03r2_at
Gene name
Homology with ArabidopsisSimilar to At5g20400: oxidoreductase, 2OG-Fe(II) oxygenase family protein (HF=5e-3)
Module size 6 genes
NF 0.13
%ile 16.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.00.92HVSMEa0007I03r2_atHVSMEa0007I03r2--5e-3At5g20400oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.5066.90.92Contig2453_atContig2453--9e-24At4g11600ATGPX6 (GLUTATHIONE PEROXIDASE 6)O.I.H.G.S.X.
0.2326.10.92HW06H18u_s_atHW06H18u--2e-7At3g62220serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.086.50.93Contig412_x_atContig412--1e-3At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.064.80.93Contig23381_atContig23381--2e+0At3g05327-O.I.H.G.S.X.
0.054.10.94Contig4469_atContig4469--4e-63At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.899.5GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
5.297.4GSM261037Dicktoo-subzero-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
4.296.3GSM261054Bonus Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.995.8GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.795.5GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.595.1GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.394.6GSM261035Dicktoo-chilling-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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