Co-expression analysis

Gene ID	HVSMEa0004A18r2_at
Gene name
Homology with Arabidopsis	Similar to At1g61160: - (HF=3e+0)
Module size	9 genes
NF	0.45
%ile	62.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	80.9	0.79	HVSMEa0004A18r2_at	HVSMEa0004A18r2	-	-	3e+0	At1g61160	-	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.92	Contig7388_at	Contig7388	-	-	6e-5	At3g47960	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.94	basd0c03_s_at	basd0c03	-	-	3e+0	At3g16770	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.93	Contig14243_at	Contig14243	-	-	4e+0	At1g19115	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig13179_at	Contig13179	-	-	8e-6	At1g03750	SWI2 (SWITCH 2)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig11039_at	Contig11039	multiple inositol polyphosphate phosphatase PhyIIa2	-	4e-3	At1g09870	histidine acid phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.93	EBma03_SQ003_L08_at	EBma03_SQ003_L08	-	-	4e-1	At3g57590	-	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.92	Contig9479_s_at	Contig9479	-	-	2e+0	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.91	Contig7283_at	Contig7283	-	-	5e-8	At2g26760	CYCB1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	95.3	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM372939	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.6	92.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
2.5	91.9	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.5	91.9	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.4	91.4	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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