Co-expression analysis

Gene ID HVSMEa0003D12r2_at
Gene name
Homology with ArabidopsisSimilar to At4g00335: RHB1A (HF=3e+0)
Module size 9 genes
NF 0.11
%ile 14.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8995.40.92HVSMEa0003D12r2_atHVSMEa0003D12r2--3e+0At4g00335RHB1AO.I.H.G.S.X.
0.6380.30.91Contig20443_atContig20443--3e-31At1g36160ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)O.I.H.G.S.X.
0.1818.20.93HU13P13u_atHU13P13u--4e+0At5g44130FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)O.I.H.G.S.X.
0.1716.90.93HS05I23r_atHS05I23r--8e+0At3g22435XS domain-containing proteinO.I.H.G.S.X.
0.097.40.95EBro08_SQ007_H23_atEBro08_SQ007_H23--8e-1At1g02450NIMIN1 (NIM1-INTERACTING 1)O.I.H.G.S.X.
0.086.50.94HA30O17r_atHA30O17r--9e-10At4g3386540S ribosomal protein S29 (RPS29C)O.I.H.G.S.X.
0.086.50.93EBro08_SQ004_I03_atEBro08_SQ004_I03--5e+0At4g34750auxin-responsive protein, putative / small auxin up RNA (SAUR_E)O.I.H.G.S.X.
0.075.80.92Contig22928_atContig22928--5e-1At5g09960unknown proteinO.I.H.G.S.X.
0.054.10.93HC113H04_SK_atHC113H04_SK--3e+0At2g42410ZFP11 (ZINC FINGER PROTEIN 11)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.397.4GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.995.8GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.995.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.595.1GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.595.1GSM282020Malting_day4_Legacy_rep 3GSE11200Expression data from malting barley seedsLink to GEO
3.494.8GSM419979Awn_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.494.8GSM440970Control awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.394.6GSM440967Stressed palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.394.6GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage