Co-expression analysis

Gene ID	HV10L10u_at
Gene name
Homology with Arabidopsis	Similar to At2g05520: GRP-3 (GLYCINE-RICH PROTEIN 3) (HF=3e+0)
Module size	11 genes
NF	0.62
%ile	84.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	85.5	0.84	HV10L10u_at	HV10L10u	-	-	3e+0	At2g05520	GRP-3 (GLYCINE-RICH PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.89	Contig20150_at	Contig20150	-	-	1e-5	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.85	Contig3163_at	Contig3163	-	-	7e-1	At3g52540	OFP18 (OVATE FAMILY PROTEIN 18)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig11168_at	Contig11168	-	-	1e-15	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.92	Contig11041_at	Contig11041	-	-	1e+0	At3g08940	LHCB4.2 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.92	Contig11519_at	Contig11519	-	-	2e-4	At1g66680	AR401	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.92	Contig6254_at	Contig6254	-	-	3e+0	At2g37950	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig4511_at	Contig4511	SGT1 protein	-	1e-11	At4g11260	SGT1B	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig5149_at	Contig5149	-	-	4e-2	At1g66670	CLPP3	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.88	Contig20856_at	Contig20856	-	-	3e-1	At4g14830	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.89	Contig8990_at	Contig8990	-	-	3e-10	At2g02800	APK2B (PROTEIN KINASE 2B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.1	99.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
6.0	97.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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