Co-expression analysis

Gene ID HV04B19u_at
Gene name
Homology with ArabidopsisSimilar to At5g55507: hydroxyproline-rich glycoprotein family protein (HF=9e-1)
Module size 6 genes
NF 0.45
%ile 62.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.71HV04B19u_atHV04B19u--9e-1At5g55507hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.8394.00.76Contig21789_atContig21789--3e-1At4g39260GR-RBP8O.I.H.G.S.X.
0.5066.90.84Contig16356_atContig16356--2e+0At5g19200short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4458.90.81Contig18983_atContig18983--1e+0At2g18465DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.4458.90.83EBem10_SQ003_N11_atEBem10_SQ003_N11--3e+0At3g06770glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.119.40.76Contig11888_atContig11888--8e-1At3g10260reticulon family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.399.7GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
15.399.6GSM372945genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
8.798.9GSM372969genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
7.198.4GSM372946genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
7.098.4GSM372953genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.998.3GSM372950genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.998.3GSM372972genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.898.3GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage